Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| terminus macrodomain insulation protein yfbv | CAY62_RS10255 | Not Available | Negative | 2247764 - 2248213 | 17466.5 |
| acetate kinase | CAY62_RS10260 | Not Available | Positive | 2248553 - 2249749 | 42864.5 |
| phosphate acetyltransferase | CAY62_RS10265 | Not Available | Positive | 2249925 - 2252057 | 76360.5 |
| phosphodiesterase | CAY62_RS10270 | Not Available | Negative | 2252157 - 2252705 | 20328.7 |
| tigr01777 family oxidoreductase | CAY62_RS10275 | Not Available | Positive | 2252835 - 2253743 | 33660.6 |
| sdr family nad(p)-dependent oxidoreductase | CAY62_RS10280 | Not Available | Positive | 2253760 - 2254584 | 30963.4 |
| co-chaperone ybbn | CAY62_RS10285 | Not Available | Positive | 2254858 - 2255712 | 31934.2 |
| meta domain-containing protein | CAY62_RS10290 | Not Available | Negative | 2255780 - 2256193 | 15146.5 |
| ompa family protein | CAY62_RS10295 | Not Available | Negative | 2256381 - 2257412 | 36069.1 |
| transcriptional regulator | CAY62_RS10300 | Not Available | Positive | 2258085 - 2258750 | 24832.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


