Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-6-phosphate isomerase, class i | CAY62_RS10100 | Not Available | Negative | 2212197 - 2213396 | 43808.8 |
| porin family protein | CAY62_RS10105 | Not Available | Positive | 2213758 - 2214363 | 22284.4 |
| is256 family transposase | CAY62_RS10110 | Not Available | Negative | 2214398 - 2215606 | 46568.9 |
| multidrug efflux rnd transporter permease subunit | CAY62_RS10115 | Not Available | Negative | 2216150 - 2219257 | 112926.0 |
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS10120 | Not Available | Negative | 2219257 - 2220366 | 39672.5 |
| Trna-tyr | Not Available | Not Available | Positive | 2220846 - 2220930 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2221027 - 2221111 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2221209 - 2221293 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2221391 - 2221475 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2221573 - 2221657 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


