Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| epsg family protein | CAY62_RS10045 | Not Available | Negative | 2203022 - 2203678 | 25578.3 |
| glycosyltransferase family 2 protein | CAY62_RS10050 | Not Available | Negative | 2203683 - 2204408 | 27470.2 |
| lps o-antigen chain length determinant protein wzzb | CAY62_RS10055 | Not Available | Negative | 2204668 - 2205747 | 40676.1 |
| yfcl family protein | CAY62_RS10060 | Not Available | Negative | 2205899 - 2206171 | 10244.1 |
| elongation factor p hydroxylase | CAY62_RS10065 | Not Available | Negative | 2206194 - 2206745 | 21288.1 |
| trimeric intracellular cation channel family protein | CAY62_RS10070 | Not Available | Positive | 2207166 - 2207801 | 22957.0 |
| chorismate synthase | CAY62_RS10080 | Not Available | Negative | 2208183 - 2209271 | 39370.8 |
| is256 family transposase | CAY62_RS10085 | Not Available | Positive | 2209528 - 2210736 | 46553.9 |
| hypothetical protein | CAY62_RS10090 | Not Available | Negative | 2210756 - 2211118 | 13726.0 |
| phospholipase a | CAY62_RS10095 | Not Available | Negative | 2211075 - 2211911 | 31841.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


