Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fimv/hubp family polar landmark protein | CAY62_RS09780 | Not Available | Negative | 2143728 - 2147732 | 146793.0 |
| aspartate-semialdehyde dehydrogenase | CAY62_RS09790 | Not Available | Negative | 2148029 - 2149042 | 37270.3 |
| 4-phosphoerythronate dehydrogenase | CAY62_RS09795 | Not Available | Negative | 2149026 - 2150210 | 43123.8 |
| nucleotide sugar dehydrogenase | CAY62_RS09800 | Not Available | Negative | 2150377 - 2151543 | 43102.5 |
| beta-ketoacyl-acp synthase i | CAY62_RS09810 | Not Available | Negative | 2152423 - 2153637 | 42846.2 |
| fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | CAY62_RS09815 | Not Available | Positive | 2153899 - 2156232 | 85938.2 |
| giy-yig nuclease family protein | CAY62_RS09820 | Not Available | Negative | 2157307 - 2157585 | 11167.3 |
| mbl fold metallo-hydrolase rna specificity domain-containing protein | CAY62_RS09825 | Not Available | Negative | 2157589 - 2158998 | 51910.8 |
| n-acetylmuramoyl-l-alanine amidase | CAY62_RS09830 | Not Available | Positive | 2159500 - 2160126 | 24019.8 |
| hypothetical protein | CAY62_RS09835 | Not Available | Positive | 2160123 - 2160992 | 33401.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


