Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | CAY62_RS09725 | Not Available | Positive | 2132935 - 2133810 | 33361.2 |
| is21-like element helper atpase istb | CAY62_RS09730 | Not Available | Negative | 2134280 - 2135038 | 28681.8 |
| is21 family transposase | CAY62_RS09735 | Not Available | Negative | 2135025 - 2136068 | 40000.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS09740 | Not Available | Positive | 2136156 - 2136659 | 18160.8 |
| amidophosphoribosyltransferase | CAY62_RS09750 | Not Available | Negative | 2137050 - 2138567 | 55911.8 |
| cvpa family protein | CAY62_RS09755 | Not Available | Negative | 2138637 - 2139128 | 17997.2 |
| cell division protein dedd | CAY62_RS09760 | Not Available | Negative | 2139193 - 2139825 | 22813.2 |
| bifunctional tetrahydrofolate synthase/dihydrofolate synthase | CAY62_RS09765 | Not Available | Negative | 2139879 - 2141147 | 45842.7 |
| acetyl-coa carboxylase, carboxyltransferase subunit beta | CAY62_RS09770 | Not Available | Negative | 2141372 - 2142304 | 34139.4 |
| trna pseudouridine(38-40) synthase trua | CAY62_RS09775 | Not Available | Negative | 2142701 - 2143486 | 29601.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


