Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endopeptidase la | CAY62_RS09670 | Not Available | Negative | 2120138 - 2122501 | 87850.5 |
| atp-dependent protease atp-binding subunit clpx | CAY62_RS09675 | Not Available | Negative | 2122727 - 2124007 | 46816.0 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | CAY62_RS09680 | Not Available | Negative | 2124120 - 2124743 | 22932.6 |
| trigger factor | CAY62_RS09685 | Not Available | Negative | 2124849 - 2126147 | 47550.9 |
| Trna-arg | Not Available | Not Available | Positive | 2126658 - 2126734 | Not Available |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | CAY62_RS09695 | Not Available | Positive | 2126992 - 2127843 | 30482.1 |
| utp--glucose-1-phosphate uridylyltransferase galu | CAY62_RS09705 | Not Available | Negative | 2128196 - 2129098 | 32374.3 |
| transcription/translation regulatory transformer protein rfah | CAY62_RS09710 | Not Available | Negative | 2129186 - 2129683 | 19152.1 |
| peptide mfs transporter | CAY62_RS09715 | Not Available | Positive | 2130119 - 2131507 | 49884.9 |
| response regulator | CAY62_RS09720 | Not Available | Negative | 2131560 - 2132612 | 38928.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


