Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isochorismate synthase menf | CAY62_RS09620 | Not Available | Negative | 2110020 - 2111387 | 51560.3 |
| pyridoxal phosphate-dependent aminotransferase | CAY62_RS09625 | Not Available | Positive | 2111856 - 2113070 | 45391.0 |
| 5'-deoxynucleotidase | CAY62_RS09630 | Not Available | Positive | 2113180 - 2113764 | 22276.8 |
| anti-phage deoxyguanosine triphosphatase | CAY62_RS09635 | Not Available | Positive | 2113764 - 2115092 | 50831.8 |
| pp_01831 | CAY62_RS09640 | Not Available | Negative | 2115269 - 2115889 | Not Available |
| rhombosortase | CAY62_RS09645 | Not Available | Positive | 2115899 - 2116456 | 20406.1 |
| duf1971 domain-containing protein | CAY62_RS09650 | Not Available | Positive | 2116543 - 2116881 | 12709.9 |
| comea family dna-binding protein | CAY62_RS09655 | Not Available | Negative | 2116966 - 2117253 | 10506.8 |
| peptidylprolyl isomerase | CAY62_RS09660 | Not Available | Negative | 2117416 - 2119314 | 70436.8 |
| nucleoid-associated protein hu-beta | CAY62_RS09665 | Not Available | Negative | 2119665 - 2119937 | 9362.11 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


