Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycgn family cysteine cluster protein | CAY62_RS09570 | Not Available | Negative | 2099520 - 2099957 | 16941.7 |
| ykgj family cysteine cluster protein | CAY62_RS09575 | Not Available | Positive | 2100223 - 2100477 | 8966.94 |
| tigr02647 family protein | CAY62_RS09580 | Not Available | Negative | 2100497 - 2100742 | 8869.73 |
| tim44 domain-containing protein | CAY62_RS09585 | Not Available | Negative | 2100995 - 2101852 | 31333.5 |
| tetr/acrr family transcriptional regulator | CAY62_RS09590 | Not Available | Positive | 2102446 - 2103042 | 22708.1 |
| mfs transporter | CAY62_RS09595 | Not Available | Positive | 2103057 - 2104934 | 69459.5 |
| o-succinylbenzoate--coa ligase | CAY62_RS09600 | Not Available | Negative | 2105019 - 2106449 | 53046.5 |
| o-succinylbenzoate synthase | CAY62_RS09605 | Not Available | Negative | 2106437 - 2107411 | 35702.8 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | CAY62_RS09610 | Not Available | Negative | 2107464 - 2108288 | 30426.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | CAY62_RS09615 | Not Available | Negative | 2108272 - 2110038 | 63630.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


