Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spovr family protein | CAY62_RS09525 | Not Available | Positive | 2090088 - 2091617 | 60376.4 |
| fatty acid metabolism transcriptional regulator fadr | CAY62_RS09530 | Not Available | Negative | 2091701 - 2092552 | 32808.2 |
| na(+)/h(+) antiporter nhab | CAY62_RS09535 | Not Available | Positive | 2093149 - 2094738 | 57641.8 |
| disulfide bond formation protein dsbb | CAY62_RS09540 | Not Available | Positive | 2094968 - 2095480 | 19492.1 |
| sec-c metal-binding domain-containing protein | CAY62_RS09545 | Not Available | Negative | 2095559 - 2096182 | 22972.5 |
| trna dihydrouridine(16) synthase dusc | CAY62_RS09550 | Not Available | Positive | 2096366 - 2097310 | 35435.6 |
| neutral zinc metallopeptidase | CAY62_RS09555 | Not Available | Positive | 2097551 - 2098414 | 31354.2 |
| hypothetical protein | CAY62_RS21425 | Not Available | Positive | 2098672 - 2098812 | 5352.53 |
| type ii caax prenyl endopeptidase rce1 family protein | CAY62_RS09560 | Not Available | Negative | 2098940 - 2099119 | 6498.32 |
| hypothetical protein | CAY62_RS22200 | Not Available | Negative | 2099205 - 2099339 | 5133.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


