Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptide peptidase sppa | CAY62_RS09475 | Not Available | Positive | 2078065 - 2079918 | 67428.7 |
| asparaginase | CAY62_RS09480 | Not Available | Positive | 2080185 - 2081198 | 36916.5 |
| yeac family protein | CAY62_RS09485 | Not Available | Negative | 2081275 - 2081559 | 10729.8 |
| duf2989 domain-containing protein | CAY62_RS09490 | Not Available | Positive | 2081762 - 2082613 | 33212.6 |
| peptide-methionine (r)-s-oxide reductase msrb | CAY62_RS09495 | Not Available | Negative | 2082688 - 2083083 | 14732.0 |
| type i glyceraldehyde-3-phosphate dehydrogenase | CAY62_RS09500 | Not Available | Positive | 2083421 - 2084416 | 35186.8 |
| d-hexose-6-phosphate mutarotase | CAY62_RS09505 | Not Available | Positive | 2084740 - 2085615 | 32510.2 |
| voc family protein | CAY62_RS09510 | Not Available | Negative | 2085704 - 2086084 | 13569.4 |
| prka family serine protein kinase | CAY62_RS09515 | Not Available | Positive | 2086745 - 2088679 | 74384.1 |
| yeah/yhbh family protein | CAY62_RS09520 | Not Available | Positive | 2088730 - 2090001 | 48823.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


