Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1414 domain-containing protein | CAY62_RS09425 | Not Available | Positive | 2065410 - 2065628 | 7888.57 |
| duf3413 domain-containing protein | CAY62_RS09430 | Not Available | Positive | 2065676 - 2067544 | 71319.0 |
| hypothetical protein | CAY62_RS09435 | Not Available | Negative | 2067585 - 2067845 | 10168.8 |
| ggdef domain-containing protein | CAY62_RS09440 | Not Available | Positive | 2068096 - 2069712 | 62300.9 |
| dna topoisomerase iii | CAY62_RS09445 | Not Available | Negative | 2069754 - 2071742 | 73669.5 |
| glucosaminidase domain-containing protein | CAY62_RS09450 | Not Available | Positive | 2071906 - 2072745 | 31555.9 |
| trna 2-selenouridine(34) synthase mnmh | CAY62_RS09455 | Not Available | Negative | 2072839 - 2073933 | 41577.7 |
| selenide, water dikinase seld | CAY62_RS09460 | Not Available | Negative | 2073933 - 2074967 | 36293.6 |
| nad(p)h nitroreductase | CAY62_RS09465 | Not Available | Negative | 2075168 - 2075716 | 19700.8 |
| nadph-dependent 2,4-dienoyl-coa reductase | CAY62_RS09470 | Not Available | Negative | 2075782 - 2077794 | 73268.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


