Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-semialdehyde dehydrogenase | CAY62_RS09375 | Not Available | Negative | 2051450 - 2052565 | 40313.6 |
| na+/h+ antiporter nhac | CAY62_RS09380 | Not Available | Positive | 2053273 - 2054721 | 51171.8 |
| nucleoside recognition domain-containing protein | CAY62_RS09385 | Not Available | Positive | 2055268 - 2056002 | 26017.3 |
| yjig family protein | CAY62_RS09390 | Not Available | Positive | 2056002 - 2056463 | 16005.5 |
| m20 family metallopeptidase | CAY62_RS09395 | Not Available | Positive | 2056547 - 2057671 | 40128.9 |
| hydroxylamine reductase | CAY62_RS09400 | Not Available | Positive | 2057938 - 2059281 | 48686.5 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | CAY62_RS09405 | Not Available | Positive | 2059442 - 2062999 | 130492.0 |
| flavodoxin flda | CAY62_RS09410 | Not Available | Positive | 2063011 - 2063499 | 17851.6 |
| nitrous oxide-stimulated promoter family protein | CAY62_RS09415 | Not Available | Negative | 2063656 - 2064021 | 13973.2 |
| nucleoid-associated protein yejk | CAY62_RS09420 | Not Available | Negative | 2064320 - 2065333 | 38360.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


