Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | CAY62_RS09325 | Not Available | Positive | 2040613 - 2041260 | 24275.4 |
| flagellar protein moty | CAY62_RS09330 | Not Available | Negative | 2041346 - 2042239 | 34165.0 |
| ribonuclease t | CAY62_RS09335 | Not Available | Positive | 2042399 - 2043064 | 24687.1 |
| outer membrane protein transport protein | CAY62_RS09340 | Not Available | Positive | 2043363 - 2044607 | 45152.4 |
| vola/pla-1 family phospholipase | CAY62_RS09345 | Not Available | Positive | 2044631 - 2047033 | 84865.5 |
| peroxiredoxin c | CAY62_RS09350 | Not Available | Negative | 2047117 - 2047722 | 22242.3 |
| na+/h+ antiporter family protein | CAY62_RS09355 | Not Available | Positive | 2048015 - 2049337 | 45945.8 |
| rho-binding antiterminator | CAY62_RS09360 | Not Available | Positive | 2049476 - 2049757 | 10767.9 |
| grx4 family monothiol glutaredoxin | CAY62_RS09365 | Not Available | Negative | 2049835 - 2050164 | 12190.8 |
| superoxide dismutase | CAY62_RS09370 | Not Available | Positive | 2050672 - 2051256 | 21484.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


