Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1294 domain-containing protein | CAY62_RS09180 | Not Available | Negative | 2011268 - 2011630 | 13973.9 |
| cupin domain-containing protein | CAY62_RS09185 | Not Available | Positive | 2011877 - 2013010 | 43320.7 |
| eal domain-containing protein | CAY62_RS09190 | Not Available | Positive | 2013253 - 2014188 | 35206.0 |
| diguanylate cyclase | CAY62_RS09195 | Not Available | Positive | 2014193 - 2015746 | 60104.1 |
| murein tripeptide/oligopeptide abc transporter atp binding protein oppf | CAY62_RS09200 | Not Available | Negative | 2015832 - 2016818 | 36204.5 |
| abc transporter atp-binding protein | CAY62_RS09205 | Not Available | Negative | 2016812 - 2017783 | 35884.0 |
| oligopeptide abc transporter permease oppc | CAY62_RS09210 | Not Available | Negative | 2017857 - 2018768 | 33813.8 |
| oligopeptide abc transporter permease oppb | CAY62_RS09215 | Not Available | Negative | 2018783 - 2019703 | 33614.1 |
| abc transporter substrate-binding protein | CAY62_RS09220 | Not Available | Negative | 2019783 - 2021411 | 60608.5 |
| hypothetical protein | CAY62_RS21555 | Not Available | Negative | 2021904 - 2022065 | 6282.41 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


