Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpa | CAY62_RS09130 | Not Available | Negative | 1999212 - 2001476 | 83637.1 |
| atp-dependent clp protease adapter clps | CAY62_RS09135 | Not Available | Negative | 2001521 - 2001841 | 12245.8 |
| cold shock domain-containing protein cspd | CAY62_RS09140 | Not Available | Positive | 2002099 - 2002320 | 8084.45 |
| nadp-dependent isocitrate dehydrogenase | CAY62_RS09145 | Not Available | Negative | 2002746 - 2003999 | 45688.8 |
| pseudouridine synthase | CAY62_RS09150 | Not Available | Positive | 2004142 - 2004789 | 24656.9 |
| trna 2-thiouridine(34) synthase mnma | CAY62_RS09155 | Not Available | Positive | 2005066 - 2006178 | 41529.2 |
| high frequency lysogenization protein hfld | CAY62_RS09160 | Not Available | Positive | 2006194 - 2006814 | 22946.1 |
| adenylosuccinate lyase | CAY62_RS09165 | Not Available | Positive | 2006897 - 2008264 | 51290.3 |
| anaerobic nitric oxide reductase flavorubredoxin | CAY62_RS09170 | Not Available | Positive | 2008528 - 2010015 | 55539.0 |
| nadh:flavorubredoxin reductase norw | CAY62_RS09175 | Not Available | Positive | 2010040 - 2011191 | 41314.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


