Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane lipoprotein chaperone lola | CAY62_RS09080 | Not Available | Negative | 1984900 - 1985511 | 22664.7 |
| dna translocase ftsk 4tm domain-containing protein | CAY62_RS09085 | Not Available | Negative | 1985644 - 1988925 | 118071.0 |
| leucine-responsive transcriptional regulator lrp | CAY62_RS09090 | Not Available | Negative | 1989413 - 1989907 | 18861.8 |
| thioredoxin-disulfide reductase | CAY62_RS09095 | Not Available | Positive | 1990584 - 1991543 | 34556.0 |
| heme abc transporter permease/atp-binding protein cydd | CAY62_RS09100 | Not Available | Positive | 1991692 - 1993473 | 65431.8 |
| heme abc transporter atp-binding protein/permease cydc | CAY62_RS09105 | Not Available | Positive | 1993466 - 1995187 | 63505.8 |
| group ii intron reverse transcriptase/maturase | CAY62_RS09110 | Not Available | Negative | 1995245 - 1996537 | 49752.3 |
| leucyl/phenylalanyl-trna--protein transferase | CAY62_RS09115 | Not Available | Positive | 1997252 - 1997965 | 26848.9 |
| arginyltransferase | CAY62_RS09120 | Not Available | Positive | 1997969 - 1998661 | 27135.2 |
| translation initiation factor if-1 | CAY62_RS09125 | Not Available | Positive | 1998861 - 1999079 | 8219.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


