Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yhjd | CAY62_RS09030 | Not Available | Negative | 1970354 - 1971292 | 34080.9 |
| asma family protein | CAY62_RS09035 | Not Available | Negative | 1971562 - 1973682 | 76244.0 |
| dctp deaminase | CAY62_RS09040 | Not Available | Negative | 1973904 - 1974497 | 21771.9 |
| uridine kinase | CAY62_RS09045 | Not Available | Negative | 1974620 - 1975264 | 24303.6 |
| iron-sulfur cluster carrier protein apbc | CAY62_RS09050 | Not Available | Negative | 1975410 - 1976495 | 38913.9 |
| methionine--trna ligase | CAY62_RS09055 | Not Available | Positive | 1976742 - 1978790 | 76988.5 |
| dicarboxylate/amino acid:cation symporter | CAY62_RS09060 | Not Available | Positive | 1979499 - 1980815 | 46190.7 |
| hypothetical protein | CAY62_RS09065 | Not Available | Positive | 1981038 - 1981907 | 34126.7 |
| serine--trna ligase | CAY62_RS09070 | Not Available | Negative | 1981956 - 1983266 | 49030.4 |
| replication-associated recombination protein a | CAY62_RS09075 | Not Available | Negative | 1983451 - 1984794 | 49848.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


