Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maf family protein | CAY62_RS08980 | Not Available | Positive | 1957408 - 1958004 | 22069.6 |
| 23s rrna pseudouridine(955/2504/2580) synthase rluc | CAY62_RS08985 | Not Available | Negative | 1958083 - 1959030 | 36052.8 |
| ribonuclease e | CAY62_RS08990 | Not Available | Positive | 1959615 - 1962887 | 123320.0 |
| sulp family inorganic anion transporter | CAY62_RS08995 | Not Available | Positive | 1963195 - 1964751 | 55201.8 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | CAY62_RS09000 | Not Available | Positive | 1964875 - 1965903 | 36251.8 |
| adenosylcobinamide-gdp ribazoletransferase | CAY62_RS09005 | Not Available | Positive | 1965918 - 1966721 | 29487.7 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | CAY62_RS09010 | Not Available | Positive | 1966726 - 1967331 | 22458.7 |
| phosphate-starvation-inducible protein psie | CAY62_RS09015 | Not Available | Positive | 1967500 - 1967916 | 15742.9 |
| anaerobic c4-dicarboxylate transporter | CAY62_RS09020 | Not Available | Negative | 1967986 - 1969314 | 47668.2 |
| cbs domain-containing protein | CAY62_RS09025 | Not Available | Positive | 1969785 - 1970237 | 16640.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


