Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hdod domain-containing protein | CAY62_RS08880 | Not Available | Positive | 1938264 - 1939178 | 34745.1 |
| lysine exporter lyso family protein | CAY62_RS08885 | Not Available | Positive | 1939482 - 1940381 | 32621.0 |
| yidb family protein | CAY62_RS08890 | Not Available | Negative | 1940489 - 1940941 | 15251.8 |
| peptidoglycan-binding protein lysm | CAY62_RS08895 | Not Available | Negative | 1940988 - 1941416 | 15391.9 |
| pts glucose transporter subunit iibc | CAY62_RS08900 | Not Available | Negative | 1941758 - 1943188 | 50377.9 |
| rdd family protein | CAY62_RS08905 | Not Available | Negative | 1943763 - 1944230 | 17576.2 |
| pts transporter subunit eiic | CAY62_RS08910 | Not Available | Negative | 1944230 - 1945855 | 57855.2 |
| tatd family hydrolase | CAY62_RS08915 | Not Available | Negative | 1946396 - 1947175 | 29279.1 |
| dna polymerase iii subunit delta' | CAY62_RS08920 | Not Available | Negative | 1947277 - 1948239 | 35732.1 |
| dtmp kinase | CAY62_RS08925 | Not Available | Negative | 1948240 - 1948869 | 23075.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


