Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin-dependent oxidoreductase | CAY62_RS08780 | Not Available | Positive | 1902212 - 1904854 | 97362.4 |
| gnat family n-acetyltransferase | CAY62_RS08785 | Not Available | Negative | 1905025 - 1905444 | 15385.5 |
| peptidase u32 family protein | CAY62_RS08790 | Not Available | Negative | 1905517 - 1907775 | 84721.6 |
| hypothetical protein | CAY62_RS08795 | Not Available | Positive | 1908086 - 1908283 | 7860.17 |
| cytochrome b/b6 domain-containing protein | CAY62_RS08800 | Not Available | Positive | 1908444 - 1908938 | 18581.2 |
| retention module-containing protein | CAY62_RS08805 | Not Available | Negative | 1909001 - 1920802 | 416567.0 |
| lyse family translocator | CAY62_RS08810 | Not Available | Positive | 1921039 - 1921692 | 23446.8 |
| card1-like endonuclease domain-containing protein | CAY62_RS08815 | Not Available | Positive | 1922163 - 1923329 | 44454.1 |
| uridine phosphorylase | CAY62_RS08820 | Not Available | Negative | 1923462 - 1924229 | 27366.8 |
| zinc/cadmium/mercury/lead-transporting atpase | CAY62_RS08825 | Not Available | Negative | 1924694 - 1927135 | 85996.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


