Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m15 family metallopeptidase | CAY62_RS08730 | Not Available | Negative | 1885052 - 1885972 | 34575.3 |
| rna-binding s4 domain-containing protein | CAY62_RS08735 | Not Available | Negative | 1886096 - 1886533 | 15771.9 |
| elongation factor g | CAY62_RS08740 | Not Available | Positive | 1886917 - 1889004 | 76338.8 |
| c69 family dipeptidase | CAY62_RS08745 | Not Available | Negative | 1889087 - 1890562 | 54985.1 |
| tmao reductase system sensor histidine kinase/response regulator tors | CAY62_RS08750 | Not Available | Negative | 1890748 - 1893666 | 107650.0 |
| tmao reductase system periplasmic protein tort | CAY62_RS08755 | Not Available | Positive | 1893821 - 1894894 | 40150.5 |
| methylglyoxal synthase | CAY62_RS08760 | Not Available | Positive | 1895011 - 1895469 | 17071.6 |
| dna helicase iv | CAY62_RS08765 | Not Available | Negative | 1895621 - 1897726 | 80770.1 |
| yccs family putative transporter | CAY62_RS08770 | Not Available | Positive | 1898049 - 1900214 | 81823.6 |
| pentaheme c-type cytochrome torc | CAY62_RS08775 | Not Available | Negative | 1900335 - 1901504 | 43428.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


