Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3012 domain-containing protein | CAY62_RS08635 | Not Available | Positive | 1868978 - 1869160 | 6642.06 |
| Trna-leu | Not Available | Not Available | Positive | 1869294 - 1869380 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1869445 - 1869520 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 1869525 - 1869598 | Not Available |
| hypothetical protein | CAY62_RS08655 | Not Available | Positive | 1869837 - 1870649 | 30281.1 |
| pfkb family carbohydrate kinase | CAY62_RS08660 | Not Available | Negative | 1870646 - 1871677 | 39510.8 |
| duf294 nucleotidyltransferase-like domain-containing protein | CAY62_RS08665 | Not Available | Positive | 1871748 - 1873628 | 71301.0 |
| 3'-5' exonuclease | CAY62_RS08670 | Not Available | Positive | 1873639 - 1874367 | 27842.5 |
| bcct family transporter | CAY62_RS08675 | Not Available | Negative | 1874431 - 1876005 | 56802.9 |
| glutaredoxin domain-containing protein | CAY62_RS08680 | Not Available | Negative | 1876356 - 1876664 | 11492.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


