Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent succinate-semialdehyde dehydrogenase | CAY62_RS08590 | Not Available | Negative | 1858749 - 1860200 | 51948.3 |
| tonb-dependent receptor plug domain-containing protein | CAY62_RS21935 | Not Available | Positive | 1860657 - 1861226 | 20864.2 |
| hypothetical protein | CAY62_RS21940 | Not Available | Positive | 1861552 - 1862106 | 20934.0 |
| yfir family protein | CAY62_RS08600 | Not Available | Positive | 1862115 - 1862720 | 22642.8 |
| diguanylate cyclase domain-containing protein | CAY62_RS08605 | Not Available | Positive | 1862720 - 1864750 | 76227.1 |
| duf2947 domain-containing protein | CAY62_RS08610 | Not Available | Negative | 1864798 - 1865274 | 18837.9 |
| hypothetical protein | CAY62_RS08615 | Not Available | Negative | 1865364 - 1865576 | 8101.73 |
| long-chain-fatty-acid--coa ligase | CAY62_RS08620 | Not Available | Positive | 1866011 - 1867558 | 57218.7 |
| duf3108 domain-containing protein | CAY62_RS08625 | Not Available | Positive | 1867730 - 1868482 | 28990.9 |
| hypothetical protein | CAY62_RS08630 | Not Available | Negative | 1868507 - 1868758 | 9203.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


