Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2884 family protein | CAY62_RS08535 | Not Available | Negative | 1848174 - 1848611 | 16516.6 |
| is21 family transposase | CAY62_RS08540 | Not Available | Positive | 1848705 - 1849748 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS08545 | Not Available | Positive | 1849735 - 1850493 | 28681.8 |
| duf2884 family protein | CAY62_RS08550 | Not Available | Negative | 1850539 - 1850868 | 11610.1 |
| nyn domain-containing protein | CAY62_RS08555 | Not Available | Positive | 1851024 - 1851503 | 18112.5 |
| cation transporter | CAY62_RS08560 | Not Available | Negative | 1851612 - 1852289 | 24417.7 |
| lysr family transcriptional regulator | CAY62_RS08565 | Not Available | Positive | 1852484 - 1853368 | 33212.8 |
| aquaporin z | CAY62_RS08570 | Not Available | Positive | 1853852 - 1854547 | 23997.7 |
| fad-binding and (fe-s)-binding domain-containing protein | CAY62_RS08575 | Not Available | Negative | 1854647 - 1857742 | 114848.0 |
| hypothetical protein | CAY62_RS08580 | Not Available | Negative | 1857878 - 1858429 | 20357.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


