Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptide/dipeptide abc transporter atp-binding protein | CAY62_RS08190 | Not Available | Positive | 1782810 - 1783808 | 37393.4 |
| atp-binding cassette domain-containing protein | CAY62_RS08195 | Not Available | Positive | 1783805 - 1784629 | 30814.9 |
| group ii intron reverse transcriptase/maturase | CAY62_RS08200 | Not Available | Negative | 1784704 - 1785996 | 49752.3 |
| orotidine-5'-phosphate decarboxylase | CAY62_RS08205 | Not Available | Negative | 1786624 - 1787343 | 25685.0 |
| lipopolysaccharide assembly protein lapb | CAY62_RS08210 | Not Available | Negative | 1787569 - 1788738 | 44704.1 |
| lapa family protein | CAY62_RS08215 | Not Available | Negative | 1788745 - 1789029 | 10419.1 |
| integration host factor subunit beta | CAY62_RS08220 | Not Available | Negative | 1789239 - 1789526 | 10792.0 |
| 30s ribosomal protein s1 | CAY62_RS08225 | Not Available | Negative | 1789615 - 1791285 | 60614.9 |
| (d)cmp kinase | CAY62_RS08230 | Not Available | Negative | 1791410 - 1792087 | 24458.2 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | CAY62_RS08235 | Not Available | Negative | 1792370 - 1793650 | 46194.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


