Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator tyrr | CAY62_RS08140 | Not Available | Negative | 1772038 - 1773579 | 58179.6 |
| ycjf family protein | CAY62_RS08145 | Not Available | Negative | 1773946 - 1774974 | 38098.2 |
| ycjx family protein | CAY62_RS08150 | Not Available | Negative | 1774974 - 1776368 | 53323.2 |
| envelope stress response membrane protein pspc | CAY62_RS08155 | Not Available | Negative | 1776619 - 1777005 | 14643.9 |
| envelope stress response membrane protein pspb | CAY62_RS08160 | Not Available | Negative | 1777005 - 1777232 | 8752.9 |
| phage shock protein pspa | CAY62_RS08165 | Not Available | Negative | 1777299 - 1777964 | 25332.1 |
| phage shock protein operon transcriptional activator | CAY62_RS08170 | Not Available | Positive | 1778198 - 1779205 | 38016.3 |
| abc transporter substrate-binding protein sapa | CAY62_RS08175 | Not Available | Positive | 1779351 - 1780970 | 60264.6 |
| abc transporter permease | CAY62_RS08180 | Not Available | Positive | 1780974 - 1781936 | 35815.2 |
| putrescine export abc transporter permease sapc | CAY62_RS08185 | Not Available | Positive | 1781923 - 1782810 | 32255.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


