Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | CAY62_RS07940 | Not Available | Negative | 1726912 - 1728201 | 47312.5 |
| alpha/beta hydrolase ycfp | CAY62_RS07945 | Not Available | Negative | 1728400 - 1728939 | 20700.6 |
| phosphotransferase | CAY62_RS07950 | Not Available | Negative | 1729072 - 1729923 | 32585.2 |
| penicillin-binding protein activator lpob | CAY62_RS07955 | Not Available | Negative | 1729964 - 1730623 | 23974.4 |
| ycfl family protein | CAY62_RS07960 | Not Available | Negative | 1730701 - 1731084 | 13701.4 |
| purine nucleoside phosphoramidase | CAY62_RS07965 | Not Available | Negative | 1731208 - 1731558 | 13127.2 |
| dihydroorotase | CAY62_RS07970 | Not Available | Positive | 1732065 - 1733093 | 37639.0 |
| efflux rnd transporter permease subunit | CAY62_RS07975 | Not Available | Negative | 1733224 - 1736298 | 113479.0 |
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS07980 | Not Available | Negative | 1736298 - 1737392 | 39930.9 |
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS07985 | Not Available | Negative | 1737394 - 1738431 | 38112.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


