Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate cytidylyltransferase | CAY62_RS07835 | Not Available | Negative | 1705606 - 1706352 | 27759.9 |
| trm112 family protein | CAY62_RS07840 | Not Available | Negative | 1706354 - 1706533 | 6686.06 |
| tetraacyldisaccharide 4'-kinase | CAY62_RS07845 | Not Available | Negative | 1706514 - 1707548 | 37961.0 |
| lipid a abc transporter atp-binding protein/permease msba | CAY62_RS07850 | Not Available | Negative | 1707548 - 1709305 | 64387.2 |
| dna internalization-related competence protein comec/rec2 | CAY62_RS07855 | Not Available | Negative | 1709449 - 1711362 | 72728.4 |
| duf2062 domain-containing protein | CAY62_RS07860 | Not Available | Positive | 1711793 - 1712341 | 20814.1 |
| type ii secretion system pilot lipoprotein gsps-beta | CAY62_RS07865 | Not Available | Negative | 1712521 - 1712865 | 12845.7 |
| hded family acid-resistance protein | CAY62_RS07870 | Not Available | Positive | 1713118 - 1713678 | 20321.8 |
| hypothetical protein | CAY62_RS21540 | Not Available | Positive | 1714109 - 1714354 | 9571.33 |
| deda family protein | CAY62_RS07880 | Not Available | Positive | 1714400 - 1715095 | 26070.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


