Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | CAY62_RS07785 | Not Available | Negative | 1691801 - 1692784 | 37280.4 |
| hypothetical protein | CAY62_RS07790 | Not Available | Positive | 1693085 - 1693336 | 9043.61 |
| virk/ybjx family protein | CAY62_RS07795 | Not Available | Positive | 1693657 - 1694589 | 36300.6 |
| chromosome partition protein mukb | CAY62_RS07800 | Not Available | Negative | 1694791 - 1699251 | 168783.0 |
| chromosome partition protein muke | CAY62_RS07805 | Not Available | Negative | 1699251 - 1700000 | 28365.7 |
| chromosome partition protein mukf | CAY62_RS07810 | Not Available | Negative | 1699981 - 1701303 | 50469.7 |
| trna uridine 5-oxyacetic acid(34) methyltransferase cmom | CAY62_RS07815 | Not Available | Negative | 1701322 - 1702119 | 30310.7 |
| envelope biogenesis factor elyc | CAY62_RS07820 | Not Available | Positive | 1702242 - 1703078 | 30984.9 |
| l-cystine transporter | CAY62_RS07825 | Not Available | Positive | 1703408 - 1704802 | 48608.4 |
| ribosome hibernation-promoting factor, hpf/yfia family | CAY62_RS07830 | Not Available | Positive | 1705140 - 1705505 | 14022.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


