Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | CAY62_RS07735 | Not Available | Positive | 1677945 - 1680095 | 80495.6 |
| nrdjb | CAY62_RS07740 | Not Available | Positive | 1680124 - 1680810 | 25772.9 |
| putative transporter | CAY62_RS07745 | Not Available | Positive | 1681274 - 1682932 | 58785.3 |
| fusc family protein | CAY62_RS07750 | Not Available | Positive | 1683105 - 1684148 | 40173.0 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | CAY62_RS07755 | Not Available | Negative | 1684202 - 1685341 | 42502.2 |
| vitamin b12 abc transporter atp-binding protein btud | CAY62_RS07760 | Not Available | Negative | 1685440 - 1686201 | 27658.8 |
| vitamin b12 abc transporter permease btuc | CAY62_RS07765 | Not Available | Negative | 1686201 - 1687196 | 35655.7 |
| succinylglutamate desuccinylase | CAY62_RS07770 | Not Available | Negative | 1687280 - 1688311 | 38945.2 |
| integration host factor subunit alpha | CAY62_RS07775 | Not Available | Negative | 1688574 - 1688870 | 11130.4 |
| phenylalanine--trna ligase subunit beta | CAY62_RS07780 | Not Available | Negative | 1689394 - 1691781 | 86296.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


