Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | CAY62_RS07395 | Not Available | Negative | 1597124 - 1599589 | 91447.2 |
| abc transporter atp-binding protein | CAY62_RS07400 | Not Available | Negative | 1599570 - 1600241 | 24637.9 |
| mate family efflux transporter | CAY62_RS07405 | Not Available | Negative | 1600575 - 1601942 | 49463.9 |
| duf2867 domain-containing protein | CAY62_RS07410 | Not Available | Positive | 1602169 - 1603632 | 55160.9 |
| hypothetical protein | CAY62_RS07415 | Not Available | Positive | 1604205 - 1604486 | 10667.8 |
| voc family protein | CAY62_RS07420 | Not Available | Negative | 1604470 - 1604853 | 14127.2 |
| yaii/yqxd family protein | CAY62_RS07425 | Not Available | Negative | 1604885 - 1605337 | 16642.0 |
| duf3413 domain-containing protein | CAY62_RS07430 | Not Available | Negative | 1605460 - 1607274 | 69870.1 |
| abc-f family atpase | CAY62_RS07435 | Not Available | Negative | 1607473 - 1609068 | 59655.7 |
| l-threonine 3-dehydrogenase | CAY62_RS07445 | Not Available | Negative | 1609757 - 1610788 | 37649.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


