Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase family protein | CAY62_RS07340 | Not Available | Negative | 1589039 - 1589725 | 25389.5 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS07345 | Not Available | Negative | 1589881 - 1591023 | 43301.2 |
| is200/is605 family transposase | CAY62_RS07350 | Not Available | Positive | 1591108 - 1591506 | 14963.2 |
| amino acid abc transporter atp-binding protein | CAY62_RS07355 | Not Available | Negative | 1591572 - 1591769 | 7628.84 |
| potassium channel family protein | CAY62_RS07360 | Not Available | Negative | 1591762 - 1592454 | 25621.7 |
| hlyd family secretion protein | CAY62_RS07365 | Not Available | Negative | 1592499 - 1593395 | 33212.1 |
| duf1656 domain-containing protein | CAY62_RS07370 | Not Available | Negative | 1593403 - 1593606 | 7614.61 |
| amino acid abc transporter atp-binding protein | CAY62_RS07375 | Not Available | Negative | 1593612 - 1594151 | 20315.0 |
| amidohydrolase | CAY62_RS07385 | Not Available | Negative | 1594721 - 1596010 | 46959.6 |
| lipocalin-like domain-containing protein | CAY62_RS07390 | Not Available | Negative | 1596045 - 1597124 | 41087.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


