Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaredoxin family protein | CAY62_RS07185 | Not Available | Positive | 1549104 - 1549337 | 8937.99 |
| c4-dicarboxylate transporter dcuc | CAY62_RS07190 | Not Available | Positive | 1549688 - 1551067 | 49395.8 |
| hypothetical protein | CAY62_RS07195 | Not Available | Negative | 1551174 - 1552055 | 33524.9 |
| grea/greb family elongation factor | CAY62_RS07200 | Not Available | Positive | 1552484 - 1552828 | 12994.8 |
| catalase/peroxidase hpi | CAY62_RS07205 | Not Available | Negative | 1553033 - 1555219 | 81338.3 |
| agmatinase | CAY62_RS07210 | Not Available | Positive | 1555826 - 1556749 | 33489.8 |
| lysozyme inhibitor lpri family protein | CAY62_RS07215 | Not Available | Negative | 1556845 - 1557258 | 15463.5 |
| m66 family metalloprotease | CAY62_RS07220 | Not Available | Negative | 1557415 - 1560255 | 104561.0 |
| phosphoethanolamine transferase epta | CAY62_RS07225 | Not Available | Negative | 1560577 - 1562181 | 60486.4 |
| fusc family membrane protein | CAY62_RS07230 | Not Available | Positive | 1562462 - 1564549 | 78677.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


