Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS07135 | Not Available | Positive | 1537543 - 1538046 | 19406.8 |
| type i restriction endonuclease subunit r | CAY62_RS07140 | Not Available | Positive | 1538088 - 1541375 | 124004.0 |
| m48 family metallopeptidase | CAY62_RS07145 | Not Available | Positive | 1541378 - 1542154 | 30073.3 |
| cog2958 family protein | CAY62_RS07150 | Not Available | Positive | 1542166 - 1543092 | 35268.5 |
| hypothetical protein | CAY62_RS21765 | Not Available | Positive | 1543104 - 1543277 | 6666.61 |
| eve domain-containing protein | CAY62_RS07160 | Not Available | Positive | 1543270 - 1543584 | 11804.1 |
| hnh endonuclease | CAY62_RS07165 | Not Available | Positive | 1543586 - 1544116 | 20363.0 |
| amino acid abc transporter atp-binding protein | CAY62_RS07170 | Not Available | Negative | 1544175 - 1544669 | 19023.4 |
| mate family na+-driven efflux transporter | CAY62_RS07175 | Not Available | Negative | 1544818 - 1546143 | 49193.5 |
| ecoai/ftnuii family type i restriction enzme subunit r | CAY62_RS07180 | Not Available | Negative | 1546310 - 1548754 | 92615.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


