Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-type recombinase/integrase | CAY62_RS07085 | Not Available | Negative | 1525155 - 1527143 | 75743.5 |
| hypothetical protein | CAY62_RS07090 | Not Available | Negative | 1527154 - 1529091 | 74823.5 |
| tyrosine-type recombinase/integrase | CAY62_RS07095 | Not Available | Negative | 1529084 - 1530376 | 49812.3 |
| restriction endonuclease subunit s | CAY62_RS07100 | Not Available | Positive | 1530613 - 1531251 | 23385.1 |
| type i restriction-modification system subunit m | CAY62_RS07105 | Not Available | Positive | 1531265 - 1532782 | 56348.8 |
| restriction endonuclease subunit s | CAY62_RS21525 | Not Available | Positive | 1532772 - 1533998 | 46032.1 |
| aaa family atpase | CAY62_RS07115 | Not Available | Positive | 1533998 - 1535377 | 51624.6 |
| tigr02646 family protein | CAY62_RS07120 | Not Available | Positive | 1535361 - 1535996 | 23350.4 |
| duf6933 domain-containing protein | CAY62_RS07125 | Not Available | Positive | 1536215 - 1536901 | 26635.7 |
| pd-(d/e)xk nuclease family protein | CAY62_RS07130 | Not Available | Positive | 1536951 - 1537493 | 20435.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


