Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| slc13 family permease | CAY62_RS06940 | Not Available | Positive | 1492444 - 1493826 | 49263.1 |
| is21 family transposase | CAY62_RS06945 | Not Available | Positive | 1493885 - 1494928 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS06950 | Not Available | Positive | 1494915 - 1495673 | 28681.8 |
| ggdef domain-containing protein | CAY62_RS21915 | Not Available | Negative | 1495878 - 1496396 | 19895.7 |
| cia30 family protein | CAY62_RS21920 | Not Available | Negative | 1496365 - 1496790 | 15941.7 |
| dead/deah box helicase | CAY62_RS06960 | Not Available | Negative | 1497018 - 1498304 | 47839.1 |
| n-acetylglucosamine kinase | CAY62_RS06965 | Not Available | Negative | 1498532 - 1499443 | 32606.0 |
| pp_01304 | CAY62_RS06970 | Not Available | Negative | 1499572 - 1500294 | Not Available |
| duf3802 family protein | CAY62_RS06975 | Not Available | Negative | 1500407 - 1500751 | 12944.3 |
| glutathione s-transferase n-terminal domain-containing protein | CAY62_RS06980 | Not Available | Positive | 1500925 - 1501281 | 13577.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


