Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS21900 | Not Available | Negative | 1472801 - 1472995 | 6996.5 |
| is630 family transposase | CAY62_RS06850 | Not Available | Positive | 1473190 - 1474203 | 38710.4 |
| hypothetical protein | CAY62_RS06855 | Not Available | Positive | 1474214 - 1474480 | 10204.0 |
| tyrosine-type recombinase/integrase | CAY62_RS21905 | Not Available | Negative | 1474672 - 1475400 | 27872.8 |
| arm dna-binding domain-containing protein | CAY62_RS21910 | Not Available | Negative | 1475470 - 1475835 | 14237.4 |
| exodeoxyribonuclease i | CAY62_RS06865 | Not Available | Positive | 1476015 - 1477436 | 54552.0 |
| hypothetical protein | CAY62_RS06870 | Not Available | Positive | 1477578 - 1478093 | 19698.4 |
| cida/lrga family protein | CAY62_RS06875 | Not Available | Positive | 1478267 - 1478611 | 12444.8 |
| cidb/lrgb family autolysis modulator | CAY62_RS06880 | Not Available | Positive | 1478608 - 1479288 | 24274.9 |
| cytidine deaminase | CAY62_RS06885 | Not Available | Positive | 1479483 - 1480370 | 31831.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


