Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3307 domain-containing protein | CAY62_RS06795 | Not Available | Negative | 1462224 - 1462943 | 26523.2 |
| hypothetical protein | CAY62_RS06800 | Not Available | Negative | 1462973 - 1463623 | 24275.2 |
| hypothetical protein | CAY62_RS06805 | Not Available | Positive | 1464745 - 1465194 | 17172.1 |
| hypothetical protein | CAY62_RS06810 | Not Available | Positive | 1465910 - 1466677 | 29251.3 |
| is256 family transposase | CAY62_RS06815 | Not Available | Positive | 1466923 - 1468131 | 46526.9 |
| hypothetical protein | CAY62_RS06820 | Not Available | Negative | 1468262 - 1469200 | 36574.4 |
| is21 family transposase | CAY62_RS06825 | Not Available | Positive | 1469338 - 1470381 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS06830 | Not Available | Positive | 1470368 - 1471126 | 28681.8 |
| marr family winged helix-turn-helix transcriptional regulator | CAY62_RS06835 | Not Available | Negative | 1471179 - 1471454 | 10162.5 |
| tyrosine-type recombinase/integrase | CAY62_RS06840 | Not Available | Negative | 1471575 - 1472801 | 47379.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


