Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxy terminal-processing peptidase | CAY62_RS06740 | Not Available | Negative | 1448345 - 1450354 | 75270.4 |
| rna chaperone proq | CAY62_RS06745 | Not Available | Negative | 1450371 - 1451003 | 23561.2 |
| gaf domain-containing protein | CAY62_RS06750 | Not Available | Negative | 1451114 - 1451572 | 16732.2 |
| abc transporter atp-binding protein | CAY62_RS06755 | Not Available | Positive | 1451660 - 1453465 | 67089.1 |
| paraquat-inducible protein a | CAY62_RS06760 | Not Available | Positive | 1453575 - 1454768 | 44542.6 |
| pqib family protein | CAY62_RS06765 | Not Available | Positive | 1454752 - 1457376 | 95228.0 |
| 16s rrna (cytosine(1407)-c(5))-methyltransferase rsmf | CAY62_RS06770 | Not Available | Positive | 1457506 - 1458936 | 53590.0 |
| duf496 family protein | CAY62_RS06775 | Not Available | Negative | 1459168 - 1459488 | 12811.4 |
| is3 family transposase | CAY62_RS06780 | Not Available | Negative | 1459738 - 1460915 | 45492.8 |
| amino acid abc transporter atp-binding protein | CAY62_RS06785 | Not Available | Positive | 1461041 - 1461454 | 15847.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


