Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome-c oxidase, cbb3-type subunit ii | CAY62_RS06595 | Not Available | Negative | 1417555 - 1418166 | 23004.6 |
| cytochrome-c oxidase, cbb3-type subunit i | CAY62_RS06600 | Not Available | Negative | 1418178 - 1419608 | 53436.8 |
| hypothetical protein | CAY62_RS06605 | Not Available | Positive | 1419887 - 1420330 | 16247.9 |
| sdr family oxidoreductase | CAY62_RS06610 | Not Available | Negative | 1420470 - 1421195 | 26040.0 |
| fist signal transduction protein | CAY62_RS06615 | Not Available | Positive | 1421355 - 1422530 | 42491.5 |
| atp-binding protein | CAY62_RS06620 | Not Available | Positive | 1422535 - 1424616 | 78448.3 |
| helix-turn-helix domain-containing protein | CAY62_RS21885 | Not Available | Positive | 1425055 - 1425162 | 3873.82 |
| hypothetical protein | CAY62_RS21890 | Not Available | Positive | 1425217 - 1425417 | 8195.74 |
| type ii secretion system protein | CAY62_RS22185 | Not Available | Negative | 1425484 - 1425999 | 19009.9 |
| hypothetical protein | CAY62_RS06635 | Not Available | Positive | 1426119 - 1426370 | 9170.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


