Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiocytidine(32) synthetase ttca | CAY62_RS06545 | Not Available | Negative | 1408732 - 1409661 | 35156.3 |
| hypothetical protein | CAY62_RS06550 | Not Available | Positive | 1410010 - 1410357 | 12589.2 |
| universal stress protein uspe | CAY62_RS06555 | Not Available | Negative | 1410439 - 1411380 | 35223.1 |
| fnr family transcription factor | CAY62_RS06560 | Not Available | Negative | 1411660 - 1412415 | 28290.4 |
| sulfite exporter taue/safe family protein | CAY62_RS06565 | Not Available | Negative | 1412491 - 1413168 | 24288.8 |
| cbb3-type cytochrome oxidase assembly protein ccos | CAY62_RS06570 | Not Available | Negative | 1413171 - 1413371 | 7562.0 |
| heavy metal translocating p-type atpase | CAY62_RS06575 | Not Available | Negative | 1413372 - 1415792 | 89217.6 |
| fixh family protein | CAY62_RS06580 | Not Available | Negative | 1415789 - 1416280 | 18937.8 |
| cytochrome-c oxidase, cbb3-type subunit iii | CAY62_RS06585 | Not Available | Negative | 1416376 - 1417368 | 36156.8 |
| cbb3-type cytochrome oxidase subunit 3 | CAY62_RS06590 | Not Available | Negative | 1417365 - 1417544 | 6892.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


