Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase subunit gamma | CAY62_RS06445 | Not Available | Positive | 1389062 - 1390099 | 39151.0 |
| amino acid abc transporter atp-binding protein | CAY62_RS06450 | Not Available | Positive | 1390310 - 1390576 | 10108.7 |
| is21-like element helper atpase istb | CAY62_RS06455 | Not Available | Negative | 1390644 - 1391402 | 28681.8 |
| is21 family transposase | CAY62_RS06460 | Not Available | Negative | 1391389 - 1392432 | 40000.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS06465 | Not Available | Positive | 1392525 - 1392977 | 16575.9 |
| extracellular solute-binding protein | CAY62_RS06470 | Not Available | Negative | 1393036 - 1394079 | 39314.6 |
| extracellular solute-binding protein | CAY62_RS06475 | Not Available | Negative | 1394451 - 1395488 | 39041.4 |
| spermidine/putrescine abc transporter permease potc | CAY62_RS06480 | Not Available | Negative | 1395679 - 1396446 | 28068.5 |
| spermidine/putrescine abc transporter permease potb | CAY62_RS06485 | Not Available | Negative | 1396446 - 1397303 | 32341.1 |
| spermidine/putrescine abc transporter atp-binding protein pota | CAY62_RS06490 | Not Available | Negative | 1397287 - 1398405 | 41665.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


