Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | CAY62_RS06395 | Not Available | Negative | 1376677 - 1378668 | 74093.1 |
| helix-turn-helix transcriptional regulator | CAY62_RS06400 | Not Available | Negative | 1379260 - 1380171 | 33463.1 |
| formate dehydrogenase accessory sulfurtransferase fdhd | CAY62_RS06405 | Not Available | Negative | 1380187 - 1381083 | 32821.6 |
| duf3305 domain-containing protein | CAY62_RS06410 | Not Available | Positive | 1381339 - 1381836 | 19161.7 |
| duf3306 domain-containing protein | CAY62_RS06415 | Not Available | Positive | 1381826 - 1382566 | 27145.4 |
| 4fe-4s dicluster domain-containing protein | CAY62_RS06420 | Not Available | Positive | 1382858 - 1384516 | 60432.0 |
| molecular chaperone | CAY62_RS06425 | Not Available | Positive | 1384535 - 1385137 | 22430.7 |
| twin-arginine translocation signal domain-containing protein | CAY62_RS06430 | Not Available | Positive | 1385231 - 1385431 | 7294.58 |
| formate dehydrogenase subunit alpha | CAY62_RS06435 | Not Available | Positive | 1385447 - 1388308 | 106811.0 |
| formate dehydrogenase fdh3 subunit beta | CAY62_RS06440 | Not Available | Positive | 1388320 - 1388943 | 22122.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


