Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system membrane subunit tssm | CAY62_RS06295 | Not Available | Positive | 1356070 - 1359615 | 135204.0 |
| type vi secretion system impa family n-terminal domain-containing protein | CAY62_RS06300 | Not Available | Positive | 1359664 - 1360644 | 36773.7 |
| hypothetical protein | CAY62_RS06305 | Not Available | Positive | 1360647 - 1361108 | 17661.8 |
| type vi secretion system paar protein | CAY62_RS06310 | Not Available | Positive | 1361156 - 1361440 | 9315.07 |
| hypothetical protein | CAY62_RS06315 | Not Available | Negative | 1361498 - 1361698 | 7885.3 |
| histidine phosphatase family protein | CAY62_RS06320 | Not Available | Positive | 1361895 - 1362476 | 21751.7 |
| phasin-related domain-containing protein | CAY62_RS06325 | Not Available | Positive | 1362639 - 1363277 | 23230.9 |
| phasin family protein | CAY62_RS06330 | Not Available | Positive | 1363318 - 1363674 | 13213.8 |
| alpha/beta hydrolase | CAY62_RS06335 | Not Available | Positive | 1363950 - 1364945 | 36598.7 |
| d-alanyl-d-alanine endopeptidase | CAY62_RS06340 | Not Available | Negative | 1364986 - 1365888 | 32704.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


