Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssf | CAY62_RS06245 | Not Available | Positive | 1342953 - 1344719 | 66995.1 |
| type vi secretion system baseplate subunit tssg | CAY62_RS06250 | Not Available | Positive | 1344683 - 1345690 | 38085.4 |
| type vi secretion system-associated fha domain protein tagh | CAY62_RS06255 | Not Available | Positive | 1345703 - 1347172 | 55189.2 |
| type vi secretion system lipoprotein tssj | CAY62_RS06260 | Not Available | Positive | 1347219 - 1347656 | 16573.6 |
| type vi secretion system baseplate subunit tssk | CAY62_RS06265 | Not Available | Positive | 1347656 - 1348990 | 50264.8 |
| type ivb secretion system protein icmh/dotu | CAY62_RS06270 | Not Available | Positive | 1348996 - 1349796 | 30420.2 |
| type vi secretion system atpase tssh | CAY62_RS06275 | Not Available | Positive | 1349806 - 1352412 | 96857.8 |
| sigma-54 interaction domain-containing protein | CAY62_RS06280 | Not Available | Positive | 1352418 - 1353920 | 57108.4 |
| type vi secretion system-associated protein vasi | CAY62_RS06285 | Not Available | Positive | 1353926 - 1354588 | 24247.5 |
| type vi secretion system protein tssa | CAY62_RS06290 | Not Available | Positive | 1354598 - 1356046 | 54125.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


