Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mets family nss transporter small subunit | CAY62_RS21520 | Not Available | Negative | 1287384 - 1287488 | 3695.65 |
| sodium-dependent transporter | CAY62_RS05990 | Not Available | Negative | 1287490 - 1288971 | 53646.6 |
| hypothetical protein | CAY62_RS05995 | Not Available | Positive | 1290172 - 1290846 | 24566.2 |
| dj-1/pfpi family protein | CAY62_RS06000 | Not Available | Positive | 1291425 - 1292018 | 21895.5 |
| hypothetical protein | CAY62_RS06005 | Not Available | Positive | 1292356 - 1294152 | 68964.8 |
| hypothetical protein | CAY62_RS06010 | Not Available | Positive | 1294153 - 1294527 | 14049.2 |
| patatin family protein | CAY62_RS06020 | Not Available | Positive | 1295184 - 1296407 | 46419.8 |
| manganese-dependent inorganic pyrophosphatase | CAY62_RS06025 | Not Available | Negative | 1296493 - 1297398 | 33010.8 |
| gggtgrt protein | CAY62_RS06030 | Not Available | Negative | 1297666 - 1298667 | 35704.3 |
| iron-sulfur cluster assembly scaffold protein | CAY62_RS06035 | Not Available | Negative | 1298734 - 1299426 | 24792.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


