Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ni/fe-hydrogenase, b-type cytochrome subunit | CAY62_RS05940 | Not Available | Negative | 1273647 - 1274315 | 25643.6 |
| nickel-dependent hydrogenase large subunit | CAY62_RS05945 | Not Available | Negative | 1274364 - 1276067 | 62463.1 |
| hydrogenase small subunit | CAY62_RS05950 | Not Available | Negative | 1276071 - 1277207 | 40928.1 |
| molecular chaperone tord | CAY62_RS05955 | Not Available | Negative | 1277565 - 1278212 | 24366.1 |
| trimethylamine-n-oxide reductase tora | CAY62_RS05960 | Not Available | Negative | 1278416 - 1280947 | 93351.1 |
| pentaheme c-type cytochrome torc | CAY62_RS05965 | Not Available | Negative | 1281022 - 1282188 | 43264.7 |
| two-component system response regulator torr | CAY62_RS05970 | Not Available | Positive | 1282390 - 1283103 | 27276.1 |
| pyridoxal-dependent aspartate 1-decarboxylase panp | CAY62_RS05975 | Not Available | Negative | 1283717 - 1285366 | 61699.9 |
| duf2860 domain-containing protein | CAY62_RS05980 | Not Available | Negative | 1285509 - 1286498 | 37174.1 |
| hypothetical protein | CAY62_RS05985 | Not Available | Negative | 1286693 - 1287205 | 19895.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


