Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme utilization cystosolic carrier protein hutx | CAY62_RS05895 | Not Available | Positive | 1266250 - 1266696 | 16636.3 |
| heme utilization protein hutz | CAY62_RS05900 | Not Available | Positive | 1266696 - 1267253 | 21053.3 |
| membrane protein | CAY62_RS05905 | Not Available | Positive | 1267495 - 1267890 | 14463.9 |
| hypothetical protein | CAY62_RS05910 | Not Available | Negative | 1268120 - 1268689 | 21030.7 |
| hydrogenase nickel incorporation protein hypb | CAY62_RS05915 | Not Available | Positive | 1269020 - 1269757 | 27572.9 |
| hydrogenase maturation nickel metallochaperone hypa | CAY62_RS05920 | Not Available | Positive | 1269772 - 1270119 | 12671.2 |
| hypothetical protein | CAY62_RS21515 | Not Available | Positive | 1270296 - 1270436 | 5219.33 |
| recx family transcriptional regulator | CAY62_RS05925 | Not Available | Negative | 1270473 - 1271261 | 30172.0 |
| hypothetical protein | CAY62_RS05930 | Not Available | Negative | 1271381 - 1273102 | 65057.3 |
| hyad/hybd family hydrogenase maturation endopeptidase | CAY62_RS05935 | Not Available | Negative | 1273099 - 1273644 | 20226.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


