Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmc family oxidoreductase | CAY62_RS05645 | Not Available | Positive | 1211880 - 1213511 | 59947.6 |
| hypothetical protein | CAY62_RS05650 | Not Available | Positive | 1213486 - 1214553 | 40133.0 |
| metalloregulator arsr/smtb family transcription factor | CAY62_RS05655 | Not Available | Positive | 1214605 - 1215363 | 28647.7 |
| arsj-associated glyceraldehyde-3-phosphate dehydrogenase | CAY62_RS05660 | Not Available | Positive | 1215537 - 1216550 | 36730.1 |
| cyclin-dependent kinase inhibitor 3 family protein | CAY62_RS05665 | Not Available | Positive | 1216613 - 1217116 | 18402.1 |
| organoarsenical effux mfs transporter arsj | CAY62_RS05670 | Not Available | Positive | 1217166 - 1218398 | 44394.4 |
| had family hydrolase | CAY62_RS05675 | Not Available | Positive | 1218457 - 1219137 | 24858.7 |
| hypothetical protein | CAY62_RS05680 | Not Available | Positive | 1219191 - 1219460 | 10154.2 |
| alanine dehydrogenase | CAY62_RS05685 | Not Available | Positive | 1219854 - 1220969 | 39457.0 |
| isochorismatase family cysteine hydrolase | CAY62_RS05690 | Not Available | Negative | 1221059 - 1221622 | 21057.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


