Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | CAY62_RS05455 | Not Available | Positive | 1179701 - 1180219 | 19113.6 |
| type vi secretion system tip protein vgrg | CAY62_RS05460 | Not Available | Positive | 1180595 - 1182616 | 74805.6 |
| duf4123 domain-containing protein | CAY62_RS05465 | Not Available | Positive | 1182613 - 1183464 | 32879.4 |
| toxin vasx | CAY62_RS05470 | Not Available | Positive | 1183454 - 1186585 | 115750.0 |
| hypothetical protein | CAY62_RS05475 | Not Available | Positive | 1186591 - 1187295 | 26951.2 |
| hypothetical protein | CAY62_RS05480 | Not Available | Positive | 1187418 - 1187960 | 20718.8 |
| hypothetical protein | CAY62_RS05490 | Not Available | Positive | 1188326 - 1188784 | 17913.2 |
| duf3297 family protein | CAY62_RS05495 | Not Available | Negative | 1189002 - 1189250 | 9413.18 |
| amino acid abc transporter atp-binding protein | CAY62_RS05500 | Not Available | Negative | 1189458 - 1190042 | 22493.1 |
| tryptophan--trna ligase | CAY62_RS05505 | Not Available | Negative | 1190139 - 1191152 | 37115.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


